Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_2301Transcriptional activator, putative; Similar to SP:P40685; identified by sequence similarity; putative. (226 aa)    
Predicted Functional Partners:
VC_2302
RNA polymerase sigma-70 factor, ECF subfamily; Similar to PID:1654108; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.989
VC_1120
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.824
VC_2303
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.795
VC_1044
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.769
VC_2467
RNA polymerase sigma-E factor; Similar to PID:777747 PID:780317; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.766
VC_1045
RNA polymerase sigma-70 factor, ECF subfamily; Similar to GB:AL009126; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.751
VC_1121
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.668
VC_1125
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.635
VC_1122
Cyclopropane-fatty-acyl-phospholipid synthase; Similar to GB:M98330 SP:P30010 PID:145514 GB:U00096 PID:1742735; identified by sequence similarity; putative.
 
   
 0.523
VC_A0055
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.479
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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