STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2303Conserved hypothetical protein; Identified by Glimmer2; putative. (193 aa)    
Predicted Functional Partners:
VC_2302
RNA polymerase sigma-70 factor, ECF subfamily; Similar to PID:1654108; identified by sequence similarity; putative; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.752
VC_2301
Transcriptional activator, putative; Similar to SP:P40685; identified by sequence similarity; putative.
 
   
 0.748
sbcD
Exonuclease SbcD, putative; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 0.598
VC_0063
thiF protein; Similar to SP:P30138 PID:396331 PID:414234 GB:U00096 PID:1790425; identified by sequence similarity; putative.
    
 0.560
VC_0181
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
 0.560
VC_A0399
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.560
VC_A0618
Molybdopterin biosynthesis MoeB protein; Similar to GB:M21151 SP:P12282 PID:145540 GB:U00096 PID:1651375; identified by sequence similarity; putative.
    
 0.560
VC_A0236
Hypothetical protein; Identified by Glimmer2; putative.
    
  0.558
VC_2304
Hypothetical protein; Identified by Glimmer2; putative.
       0.555
VC_A0055
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.534
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.