Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC_2305Outer membrane protein OmpK; Similar to PID:1166401 SP:P51002; identified by sequence similarity; putative. (296 aa)    
Predicted Functional Partners:
lamB
Maltoporin; Involved in the transport of maltose and maltodextrins; Belongs to the porin LamB (TC 1.B.3) family.
  
   
 0.729
panE
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.721
csd
Aminotransferase, class V; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.721
VC_2662
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.687
exbD1
TonB system transport protein ExbD1; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
  
     0.674
VC_2308
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; Similar to PID:1100872 GB:U00096 SP:Q46948 PID:1773108 PID:1786626; identified by sequence similarity; putative.
       0.609
VC_0317
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.594
VC_2304
Hypothetical protein; Identified by Glimmer2; putative.
       0.594
VC_A0065
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.594
VC_A0576
Heme transport protein HutA; Similar to GB:L27149 PID:529727; identified by sequence similarity; putative.
  
   
 0.571
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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