Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_2334Conserved hypothetical protein; Identified by Glimmer2; putative. (327 aa)    
Predicted Functional Partners:
VC_2335
Hypothetical protein; Identified by Glimmer2; putative.
       0.849
VC_2333
Ribosomal protein S6 modification protein-related protein; Similar to GB:AE000782; identified by sequence similarity; putative.
 
     0.758
VC_2690
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
  
 0.526
VC_2332
Acetyltransferase, GNAT family; Similar to GB:Pyro_h; identified by sequence similarity; putative.
 
     0.499
VC_2757
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.487
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
   
   0.486
VC_0149
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
  
    0.455
VC_A0634
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.440
VC_2280
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.