Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_2335Hypothetical protein; Identified by Glimmer2; putative. (195 aa)    
Predicted Functional Partners:
VC_2334
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.849
VC_A0348
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.554
VC_A0503
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.554
VC_2333
Ribosomal protein S6 modification protein-related protein; Similar to GB:AE000782; identified by sequence similarity; putative.
     
 0.552
VC_A0561
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.530
VC_A0754
Lipase-related protein; Similar to SP:P19515 PID:488853; identified by sequence similarity; putative.
  
     0.492
VC_2691
Periplasmic protein cpxP, putative; Similar to SP:P32158; identified by sequence similarity; putative.
  
     0.479
VC_1541
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.472
VC_0132
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.441
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.424
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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