Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2383Transcriptional regulator, LysR family; Similar to SP:Q01610 PID:45367; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (286 aa)    
Predicted Functional Partners:
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
     0.675
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
  
     0.661
VC_1210
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.637
VC_A0573
DamX-related protein; Similar to SP:P11557 GB:Z19601 PID:41226 PID:43274 PID:606322; identified by sequence similarity; putative.
  
     0.614
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.604
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
  
 
   0.593
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.578
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
  
     0.574
VC_2382
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.571
VC_1825
Transcriptional regulator; Similar to GB:U00096 PID:1788725; identified by sequence similarity; putative.
  
    0.557
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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