Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
VC_2440Conserved hypothetical protein; Identified by Glimmer2; putative. (505 aa)    
Predicted Functional Partners:
VC_2441
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.725
VC_2442
Pho4 family protein; Similar to GB:L42023 SP:P45268 PID:1007859 PID:1221747 PID:1205836; identified by sequence similarity; putative.
       0.653
VC_1099
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.640
yihI
Conserved hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
   
 0.612
VC_2443
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.596
VC_2039
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.486
bamC
Lipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.485
VC_1433
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.472
VC_1271
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.470
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.466
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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