STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2507Conserved hypothetical protein; Identified by Glimmer2; putative. (458 aa)    
Predicted Functional Partners:
VC_1873
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0229 family.
   
    0.562
VC_1872
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.554
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
       0.537
VC_1874
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.477
VC_0419
Cytoplasmic axial filament protein; Similar to SP:P25537 PID:48826 PID:606187 GB:U00096 PID:1789645; identified by sequence similarity; putative.
  
    0.460
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.423
pyrB
Aspartate carbamoyltransferase, catalytic subunit; Similar to PID:1708787; identified by sequence similarity; putative.
       0.420
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
  
    0.419
VC_2566
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.418
VC_A0090
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.416
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.