Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2507Conserved hypothetical protein; Identified by Glimmer2; putative. (458 aa)    
Predicted Functional Partners:
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
       0.717
pyrB
Aspartate carbamoyltransferase, catalytic subunit; Similar to PID:1708787; identified by sequence similarity; putative.
       0.574
pyrI
Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
       0.562
VC_1872
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.510
VC_1873
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0229 family.
   
    0.466
VC_0419
Cytoplasmic axial filament protein; Similar to SP:P25537 PID:48826 PID:606187 GB:U00096 PID:1789645; identified by sequence similarity; putative.
  
    0.465
VC_2512
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.465
VC_1874
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.458
VC_1103
ABC transporter, ATP-binding protein; Similar to GB:L42023 SP:P44785 PID:1005459 PID:1220700 PID:1204872; identified by sequence similarity; putative.
   
    0.450
VC_1102
ABC transporter, permease protein, putative; Similar to GB:U14003 SP:P37772 PID:537073 GB:U00096 PID:1790678; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
   
    0.449
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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