STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2517Conserved hypothetical protein; Identified by Glimmer2; putative. (213 aa)    
Predicted Functional Partners:
VC_2518
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 0.993
VC_2516
Anti-sigma B factor antagonist, putative; Similar to SP:P45389 PID:606129 GB:U00096 PID:1789582; identified by sequence similarity; putative.
  
 
 0.975
VC_2520
ABC transporter, ATP-binding protein; Similar to SP:P45393 PID:606133 GB:U00096 PID:1789586; identified by sequence similarity; putative.
 
 
 0.968
VC_2519
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.961
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.799
VC_2515
BolA/YrbA family protein; Similar to SP:P43781 PID:606128 GB:U00096 PID:1789581; identified by sequence similarity; putative; Belongs to the BolA/IbaG family.
       0.799
VC_2513
1-acyl-sn-glycerol-3-phosphate acyltransferase; Similar to GB:M68936 SP:P26974 PID:154236; identified by sequence similarity; putative; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
 
     0.778
VC_2048
vacJ lipoprotein; Similar to GB:U00096 SP:P76506 PID:1788688 PID:1799744; identified by sequence similarity; putative.
 
 
 
 0.773
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
  
 0.747
VC_0648
Conserved hypothetical protein; May be involved in cell division.
  
   
 0.733
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.