Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2539Thiamin ABC transporter, periplasmic thiamin-binding protein; Similar to GB:D10483 SP:P31550 GB:U09984 PID:216488 PID:497658; identified by sequence similarity; putative. (330 aa)    
Predicted Functional Partners:
VC_2538
Thiamine ABC transporter, permease protein, putative; Similar to GB:D10483 SP:P31549 PID:216487 GB:U00096 PID:1786254; identified by sequence similarity; putative.
 
 
 0.996
thiQ
Thiamine ABC transporter, ATP-binding protein, putative; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.
 
 
  0.984
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.849
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
       0.849
VC_2540
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
fbp
Fructose-1,6-bisphosphatase; Similar to SP:P09200 GB:X12545 PID:41416 PID:537074 GB:U00096; identified by sequence similarity; putative.
     
 0.762
VC_2543
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
VC_0609
iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.
 
  
 0.567
VC_2078
Ferrous iron transport protein A; Similar to SP:P33649 PID:414746 PID:606343 GB:U00096 PID:1789812; identified by sequence similarity; putative.
      
 0.541
VC_A0601
ABC transporter, permease protein; Similar to GB:L42023 PID:1003160 PID:1222041 PID:1204387 PID:1573082; identified by sequence similarity; putative.
  
  
 0.492
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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