Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (211 aa)    
Predicted Functional Partners:
ubiD
Conserved hypothetical protein; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol.
 
 
 0.993
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
  
 0.957
padC
Decarboxylase; Catalyzes the decarboxylation of phenolic acids.
 
  
 0.927
VC_0651
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
  0.924
VC_0654
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
  0.924
VC_0652
Protease, putative; Similar to SP:P45527 PID:606098 GB:U00096 PID:1789548; identified by sequence similarity; putative.
 
 
  0.921
VC_0715
NADPH-flavin oxidoreductase; Similar to GB:U08996 PID:478986; identified by sequence similarity; putative; Belongs to the flavin oxidoreductase frp family.
  
  
  0.912
VC_2474
visC protein; Similar to GB:D90281 SP:P25535 PID:216629 PID:882436 GB:U00096; identified by sequence similarity; putative.
    
 0.910
VC_2435
MutT/nudix family protein; Similar to SP:P36651 PID:882564 GB:U00096 PID:1789412; identified by sequence similarity; putative.
     
  0.900
VC_A0764
MutT/nudix family protein; Similar to SP:P54570 PID:1303984 GB:AL009126; identified by sequence similarity; putative.
     
  0.900
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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