Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC_2546Conserved hypothetical protein; Putative gamma-glutamylcyclotransferase. (115 aa)    
Predicted Functional Partners:
VC_2548
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.877
VC_2547
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.871
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity).
       0.737
VC_2550
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.714
VC_1841
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.668
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.485
VC_1857
Primosomal replication protein N``; Similar to GB:D13958 PID:912452 GB:U00096 PID:1773149 PID:1786673; identified by sequence similarity; putative.
  
     0.446
VC_A0717
Helicase IV; Similar to GB:J04726 SP:P15038 PID:146328 GB:U00096 PID:1651467; identified by sequence similarity; putative.
  
     0.413
VC_2567
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.401
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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