Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_2551Conserved hypothetical protein; Identified by Glimmer2; putative. (101 aa)    
Predicted Functional Partners:
VC_2555
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.699
VC_2552
Hypothetical protein; Identified by Glimmer2; putative.
       0.671
VC_2550
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.505
VC_2083
Zinc ABC transporter, permease protein; Similar to PID:1054959 GB:U00096 PID:1788166; identified by sequence similarity; putative.
      
 0.482
VC_2553
ABC transporter, ATP-binding protein, authentic frameshift; Identified by match to PFAM protein family HMM PF00005.
       0.479
VC_2554
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.479
VC_2081
Zinc ABC transporter, periplasmic zinc-binding protein; Similar to GB:U00096 SP:P39172 PID:1736500 PID:1788164; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 9 family.
      
 0.475
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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