Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_2553ABC transporter, ATP-binding protein, authentic frameshift; Identified by match to PFAM protein family HMM PF00005. (238 aa)    
Predicted Functional Partners:
VC_2554
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.991
VC_2552
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.955
VC_2555
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.954
VC_1566
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 0.913
VC_1567
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 0.892
lolA
Outer membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity).
   
 
 0.821
VC_1629
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.820
VC_1882
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.820
VC_1884
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.820
VC_A0854
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.820
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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