STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2555Hypothetical protein; Identified by Glimmer2; putative. (173 aa)    
Predicted Functional Partners:
VC_2552
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.932
VC_2553
ABC transporter, ATP-binding protein, authentic frameshift; Identified by match to PFAM protein family HMM PF00005.
 
  
 0.923
VC_2554
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.918
VC_2551
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.647
VC_A0903
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the glycerate kinase type-1 family.
   
    0.606
VC_2081
Zinc ABC transporter, periplasmic zinc-binding protein; Similar to GB:U00096 SP:P39172 PID:1736500 PID:1788164; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.564
VC_2557
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.561
VC_2083
Zinc ABC transporter, permease protein; Similar to PID:1054959 GB:U00096 PID:1788166; identified by sequence similarity; putative.
     
 0.490
VC_2556
Hypothetical protein; Identified by Glimmer2; putative.
       0.403
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.