STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2567Conserved hypothetical protein; Identified by Glimmer2; putative. (190 aa)    
Predicted Functional Partners:
uspB
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.773
VC_1841
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.771
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.768
VC_1208
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0263 family.
  
     0.766
VC_2346
Smp protein, putative; Similar to SP:P18838 GB:M30784 GB:X03046 PID:432633 PID:436177; identified by sequence similarity; putative.
  
     0.764
VC_0153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.760
VC_2073
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.760
VC_1871
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0304 family.
  
     0.759
VC_1153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.758
bamC
Lipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.753
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.