STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2610Conserved hypothetical protein; Identified by Glimmer2; putative. (329 aa)    
Predicted Functional Partners:
VC_2608
ABC transporter, ATP-binding protein; Similar to SP:P45535 PID:606286 GB:U00096 PID:1789751; identified by sequence similarity; putative.
  
    0.800
VC_2609
Hypothetical protein; Identified by Glimmer2; putative.
       0.799
kefB
Glutathione-regulated potassium-efflux system protein KefB; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
       0.650
VC_2605
Hypothetical protein; Identified by Glimmer2; putative.
       0.613
kefG
NAD(P)H oxidoreductase, putative; Regulatory subunit of a potassium efflux system that confers protection against electrophiles. Required for full activity of KefB.
       0.613
VC_2612
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0270 family.
       0.554
slyD
Peptidyl-prolyl cis-trans isomerase, FKBP-type; Folding helper with both chaperone and peptidyl-prolyl cis- trans isomerase (PPIase) activities. Chaperone activity prevents aggregation of unfolded or partially folded proteins and promotes their correct folding. PPIases catalyze the cis-trans isomerization of Xaa- Pro bonds of peptides, which accelerates slow steps of protein folding and thus shortens the lifetime of intermediates. Both strategies lower the concentration of intermediates and increase the productivity and yield of the folding reaction; Belongs to the FKBP-type PPIase family.
       0.476
VC_2613
Phosphoribulokinase; Similar to SP:P37307 PID:606289 GB:U00096 PID:2367214; identified by sequence similarity; putative.
     
 0.450
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.