STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2622Hypothetical protein; Identified by Glimmer2; putative. (257 aa)    
Predicted Functional Partners:
VC_0180
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.750
VC_A0258
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.686
VC_A0926
Transcriptional regulator, AraC/XylS family; Similar to GP:2906236; identified by sequence similarity; putative.
  
     0.654
VC_A0978
Amino acid ABC transporter, periplasmic amino acid-binding protein, putative; Similar to GB:J01805 SP:P02910 GB:V01372 GB:V01373 GB:X52093; identified by sequence similarity; putative.
  
     0.615
VC_0769
Chitinase, putative; Similar to SP:P08252 PID:19861 PID:19863 PID:512387; identified by sequence similarity; putative.
  
     0.614
VC_A0212
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.602
VC_A0254
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.595
hap
Hemagglutinin/protease; May play a role in the pathogenesis of cholera. Hap nicks and activates the A subunit of cholera enterotoxin and related enterotoxins.
  
     0.584
VC_0283
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.574
VC_A0583
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.574
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.