Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VC_0589 | VC_2647 | VC_0589 | VC_2647 | ABC transporter, ATP-binding protein; Similar to GB:D26562 SP:P36879 PID:473794 GB:U00096 PID:1786319; identified by sequence similarity; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.512 |
VC_2647 | VC_0589 | VC_2647 | VC_0589 | Conserved hypothetical protein; Identified by Glimmer2; putative. | ABC transporter, ATP-binding protein; Similar to GB:D26562 SP:P36879 PID:473794 GB:U00096 PID:1786319; identified by sequence similarity; putative. | 0.512 |
VC_2647 | cobB | VC_2647 | VC_1509 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily. | 0.545 |
VC_2647 | padC | VC_2647 | VC_2240 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Decarboxylase; Catalyzes the decarboxylation of phenolic acids. | 0.518 |
VC_2647 | ppc | VC_2647 | VC_2646 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | 0.464 |
cobB | VC_2647 | VC_1509 | VC_2647 | Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.545 |
padC | VC_2647 | VC_2240 | VC_2647 | Decarboxylase; Catalyzes the decarboxylation of phenolic acids. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.518 |
ppc | VC_2647 | VC_2646 | VC_2647 | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.464 |