Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_2691Periplasmic protein cpxP, putative; Similar to SP:P32158; identified by sequence similarity; putative. (167 aa)    
Predicted Functional Partners:
VC_0873
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.959
VC_2693
Sensor protein CpxA; Similar to GB:M36795 SP:P08336 GB:X13307 PID:145590 PID:305015; identified by sequence similarity; putative.
 
   
 0.800
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.692
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.679
VC_A0754
Lipase-related protein; Similar to SP:P19515 PID:488853; identified by sequence similarity; putative.
  
     0.673
VC_A0735
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.652
VC_0144
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.644
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.642
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
 
     0.638
VC_1841
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.599
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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