STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2719ComF-related protein; Similar to SP:P46846 PID:606348 GB:U00096 PID:1789818; identified by sequence similarity; putative. (286 aa)    
Predicted Functional Partners:
VC_0048
Smf protein; Similar to GB:L42023 SP:P43862 PID:1006171 PID:1221098 PID:609332; identified by sequence similarity; putative.
 
 
 0.962
VC_1879
Rec2-related protein; Similar to GB:L42023 SP:P44408 PID:1003026 PID:1221968 PID:1204319; identified by sequence similarity; putative.
 
  
 0.927
VC_2199
Flagellar basal-body rod protein FlgC; Similar to GB:U00096 SP:P75935 PID:1787314; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
   
   0.884
VC_0032
ComM-related protein; Similar to GB:L42023 SP:P45049 PID:1006428 PID:1221236 PID:1205364; identified by sequence similarity; putative.
 
  
 0.879
VC_0580
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0102 family.
 
    0.731
VC_1917
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.722
VC_0510
DNA repair protein RadC-related protein; Similar to PID:1208991 GB:U00096 PID:1552815 PID:2367100; identified by sequence similarity; putative; Belongs to the UPF0758 family.
 
    0.710
VC_1786
DNA repair protein RadC, putative; Similar to PID:1208991 GB:U00096 PID:1552815 PID:2367100; identified by sequence similarity; putative; Belongs to the UPF0758 family.
 
    0.697
VC_0217
DNA repair protein RadC; Similar to GB:L42023 SP:P44952 PID:1006105 PID:1221061 PID:1205201; identified by sequence similarity; putative; Belongs to the UPF0758 family.
 
    0.694
VC_0696
Chorismate mutase/prephenate dehydrogenase; Similar to SP:Q02287 GB:M74135 GB:X60420 PID:415010 PID:43345; identified by sequence similarity; putative.
  
  
 0.692
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.