STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2756Potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (485 aa)    
Predicted Functional Partners:
VC_0043
Potassium uptake protein TrkA; Similar to GB:D28477 SP:P39448 PID:541661; identified by sequence similarity; putative.
 
 
 0.973
VC_0992
Glutathione-regulated potassium-efflux system protein KefB, putative; Similar to SP:P52068 GB:U00096 PID:1773160 PID:1786685; identified by sequence similarity; putative; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.907
VC_A0194
Potassium channel protein, putative; Similar to PID:1089906; identified by sequence similarity; putative.
  
 
 0.872
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
   
 
 0.825
VC_2757
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.760
VC_2755
Protoporphyrinogen oxidase; Similar to GB:M87049 SP:P27863 GB:X68660 PID:148250 PID:581103; identified by sequence similarity; putative.
       0.743
VC_2754
Hypothetical protein; Identified by Glimmer2; putative.
       0.709
VC_2753
Hypothetical protein; Identified by Glimmer2; putative.
       0.637
VC_2752
Hypothetical protein; Identified by Glimmer2; putative.
       0.624
fadA
Fatty oxidation complex, beta subunit; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
     
 0.501
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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