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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0023Hypothetical protein; Identified by Glimmer2; putative. (346 aa)    
Predicted Functional Partners:
VC_A0458
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.708
VC_2489
Transcriptional regulator, TetR family; Similar to GB:AL123456; identified by sequence similarity; putative.
  
     0.639
VC_A0048
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.626
VC_A0762
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.626
VC_1506
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.615
VC_0239
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.565
VC_A0024
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.563
VC_0223
ADP-heptose--LPS heptosyltransferase II, putative; Similar to GB:L42023 SP:P44011 PID:1003930 PID:1222457 PID:1204774; identified by sequence similarity; putative.
  
     0.554
VC_0935
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.503
VC_0235
Lipopolysaccharide biosynthesis protein, putative; Similar to PID:992970; identified by sequence similarity; putative.
  
     0.497
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.