Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_A0024Conserved hypothetical protein; Identified by Glimmer2; putative. (330 aa)    
Predicted Functional Partners:
VC_1229
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.712
VC_A0025
Transporter, NadC family; Similar to GB:L42023 PID:1005433 PID:1220685 PID:1204859 SP:Q57486; identified by sequence similarity; putative.
  
    0.701
maeA
Malate oxidoreductase; Similar to SP:P26616 GB:X55956 PID:581228 PID:669117 PID:669118; identified by sequence similarity; putative; Belongs to the malic enzymes family.
  
  
 0.644
VC_2681
Malate oxidoreductase, putative; Similar to PID:1902828; identified by sequence similarity; putative.
  
  
 0.644
VC_A0023
Hypothetical protein; Identified by Glimmer2; putative.
       0.592
VC_A0949
SM-20-related protein; Similar to GP:469478; identified by sequence similarity; putative.
  
 
   0.538
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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