Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_A0026Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0319 family. (211 aa)    
Predicted Functional Partners:
VC_A0573
DamX-related protein; Similar to SP:P11557 GB:Z19601 PID:41226 PID:43274 PID:606322; identified by sequence similarity; putative.
  
     0.673
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.643
VC_2346
Smp protein, putative; Similar to SP:P18838 GB:M30784 GB:X03046 PID:432633 PID:436177; identified by sequence similarity; putative.
  
     0.638
VC_2627
DamX-related protein; Similar to SP:P11557 GB:Z19601 PID:41226 PID:43274 PID:606322; identified by sequence similarity; putative.
  
     0.601
VC_1454
RstA1 protein; Similar to GP:2564352; identified by sequence similarity; putative.
  
     0.575
VC_1463
RstA2 protein; Similar to GP:2564352; identified by sequence similarity; putative.
  
     0.575
VC_1153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.574
VC_A1047
Mannitol operon repressor; Similar to SP:P36563 PID:434583 PID:466739 GB:U00096 PID:1790029; identified by sequence similarity; putative.
  
     0.558
VC_A0634
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.535
VC_1887
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.533
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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