Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_A0029Transcriptional regulator, putative; Similar to GB:AL123456; identified by sequence similarity; putative. (244 aa)    
Predicted Functional Partners:
VC_A0030
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.852
VC_A0777
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.837
VC_A0778
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.822
VC_A0231
Transcriptional regulator, AraC/XylS family; Similar to SP:P27029 GB:X57299 PID:47906; identified by sequence similarity; putative.
   
  
 0.630
VC_1210
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.548
VC_A0028
Hypothetical protein; Identified by Glimmer2; putative.
       0.548
pxpA
Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.529
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
  
    0.517
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.511
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.493
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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