Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0030Hypothetical protein; Identified by Glimmer2; putative. (280 aa)    
Predicted Functional Partners:
VC_A0029
Transcriptional regulator, putative; Similar to GB:AL123456; identified by sequence similarity; putative.
  
  
 0.852
leuS
leucyl-tRNA synthetase; Similar to SP:P07813 GB:X06331 PID:41916 GB:U00096 PID:1651269; identified by sequence similarity; putative; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.681
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
VC_A0031
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
      
 0.618
hutH
Histidine ammonia-lyase; Similar to GB:M35140 SP:P21310 PID:151274; identified by sequence similarity; putative; Belongs to the PAL/histidase family.
  
  
 0.614
hutI
Imidazolonepropionase; Similar to SP:P42084 PID:603768 GB:AL009126; identified by sequence similarity; putative; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
  
  
 0.586
argD
Acetylornithine aminotransferase; Similar to GB:M32796 SP:P18335 PID:145337 PID:606293 GB:U00096; identified by sequence similarity; putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.552
VC_A0028
Hypothetical protein; Identified by Glimmer2; putative.
       0.548
VC_A0813
Aminopeptidase; Similar to PID:1694931; identified by sequence similarity; putative.
   
 
 0.548
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.540
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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