STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0032Hypothetical protein; Identified by Glimmer2; putative. (186 aa)    
Predicted Functional Partners:
VC_A0031
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
 
     0.679
VC_1665
ABC transporter, permease protein, putative; Similar to GB:U00096 PID:1742865 PID:1788052; identified by sequence similarity; putative.
  
     0.498
VC_A0189
Response regulator; Similar to PID:1736859 PID:1736868; identified by sequence similarity; putative.
    
   0.462
VC_A0233
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.438
VC_1406
Methyl-accepting chemotaxis protein; Similar to GB:X61367 PID:48195; identified by sequence similarity; putative.
  
     0.422
VC_0098
Methyl-accepting chemotaxis protein; Similar to SP:P07017 PID:145521 GB:U00096 PID:1736539 PID:1736545; identified by sequence similarity; putative.
  
     0.408
VC_1267
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.403
VC_A0864
Methyl-accepting chemotaxis protein; Similar to GB:L29189 SP:P39214 PID:459690 GB:AL009126; identified by sequence similarity; putative.
  
     0.401
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.