Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0048Conserved hypothetical protein; Identified by Glimmer2; putative. (129 aa)    
Predicted Functional Partners:
VC_A0047
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.964
VC_A0049
GGDEF family protein; Similar to GB:U00096 PID:1787766 GB:U00096 PID:1787766; identified by sequence similarity; putative.
       0.723
VC_A0051
Hypothetical protein; Identified by Glimmer2; putative.
       0.723
VC_1748
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.656
VC_1865
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.632
VC_A0023
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.630
VC_1892
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0227 family.
  
     0.618
VC_1750
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.577
VC_A0046
Hypothetical protein; Identified by Glimmer2; putative.
       0.556
VC_0765
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.541
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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