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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0052Hypothetical protein; Identified by Glimmer2; putative. (520 aa)    
Predicted Functional Partners:
deoD2
Purine nucleoside phosphorylase; Similar to GB:U14003 SP:P09743 GB:M60917 PID:147309 PID:537224; identified by sequence similarity; putative.
       0.786
VC_A0054
Hypothetical protein; Identified by Glimmer2; putative.
       0.598
VC_A0049
GGDEF family protein; Similar to GB:U00096 PID:1787766 GB:U00096 PID:1787766; identified by sequence similarity; putative.
       0.564
VC_A0051
Hypothetical protein; Identified by Glimmer2; putative.
       0.564
VC_A0055
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.557
VC_A0050
Hypothetical protein; Identified by Glimmer2; putative.
       0.514
VC_A0056
Transcriptional regulator, MerR family; Similar to SP:P33358 PID:405858 GB:U00096 PID:1788448; identified by sequence similarity; putative.
       0.511
VC_A0058
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.504
phrA
Deoxyribodipyrimidine photolyase; Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.
       0.473
VC_A0047
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.428
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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