close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0058Conserved hypothetical protein; Identified by Glimmer2; putative. (306 aa)    
Predicted Functional Partners:
VC_A0056
Transcriptional regulator, MerR family; Similar to SP:P33358 PID:405858 GB:U00096 PID:1788448; identified by sequence similarity; putative.
     
 0.841
phrA
Deoxyribodipyrimidine photolyase; Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.
     
 0.829
VC_A0055
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.805
VC_1268
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.707
VC_1269
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.571
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.569
VC_A0054
Hypothetical protein; Identified by Glimmer2; putative.
       0.551
VC_A0164
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.536
VC_A0052
Hypothetical protein; Identified by Glimmer2; putative.
       0.504
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
 0.490
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.