Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
VC_A0058Conserved hypothetical protein; Identified by Glimmer2; putative. (306 aa)    
Predicted Functional Partners:
VC_A0055
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.842
VC_A0056
Transcriptional regulator, MerR family; Similar to SP:P33358 PID:405858 GB:U00096 PID:1788448; identified by sequence similarity; putative.
       0.842
phrA
Deoxyribodipyrimidine photolyase; Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation.
       0.800
VC_1268
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.708
VC_A0052
Hypothetical protein; Identified by Glimmer2; putative.
       0.698
VC_1269
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.621
VC_A0164
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.589
VC_A0051
Hypothetical protein; Identified by Glimmer2; putative.
       0.587
VC_A0049
GGDEF family protein; Similar to GB:U00096 PID:1787766 GB:U00096 PID:1787766; identified by sequence similarity; putative.
       0.574
VC_A0054
Hypothetical protein; Identified by Glimmer2; putative.
       0.551
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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