Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0075Hypothetical protein; Identified by Glimmer2; putative. (155 aa)    
Predicted Functional Partners:
VC_A0074
GGDEF family protein; Similar to GP:1800009; identified by sequence similarity; putative.
  
    0.806
VC_A0864
Methyl-accepting chemotaxis protein; Similar to GB:L29189 SP:P39214 PID:459690 GB:AL009126; identified by sequence similarity; putative.
     
 0.586
VC_A0043
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.579
VC_1267
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.564
VC_1266
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.540
VC_A0076
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.490
VC_1264
Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.
  
     0.463
VC_A0562
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.447
VC_1665
ABC transporter, permease protein, putative; Similar to GB:U00096 PID:1742865 PID:1788052; identified by sequence similarity; putative.
  
     0.443
VC_1667
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.424
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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