STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0101Conserved hypothetical protein; Identified by Glimmer2; putative. (518 aa)    
Predicted Functional Partners:
VC_1370
GGDEF family protein; Similar to GB:U00096 PID:1787766 GB:U00096 PID:1787766; identified by sequence similarity; putative.
 
    0.913
VC_2370
Sensory box/GGDEF family protein; Similar to PID:1652133; identified by sequence similarity; putative.
 
 
 
 0.893
VC_A0939
Sensory box/GGDEF family protein; Similar to PID:1001780 PID:1001789; identified by sequence similarity; putative.
 
 0.873
VC_A0965
GGDEF family protein; Similar to GB:AE000657; identified by sequence similarity; putative.
 
    0.868
VC_A0960
GGDEF family protein; Similar to PID:1239987 SP:P54595 PID:1336656 GB:AL009126; identified by sequence similarity; putative.
  
 0.867
VC_A0697
Sensory box/GGDEF family protein; Similar to PID:1001780 PID:1001841; identified by sequence similarity; putative.
 
 0.850
VC_1216
GGDEF family protein; Similar to GB:AE000657; identified by sequence similarity; putative.
    0.840
VC_1376
GGDEF family protein; Similar to PID:1652106; identified by sequence similarity; putative.
 
  
 0.826
VC_2285
GGDEF family protein; Similar to GP:2529422; identified by sequence similarity; putative.
 
  
 0.822
VC_2454
GGDEF family protein; Similar to GB:U00096 PID:1787766 GB:U00096 PID:1787766; identified by sequence similarity; putative.
 
    0.818
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.