Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0105Conserved hypothetical protein; Identified by Glimmer2; putative. (94 aa)    
Predicted Functional Partners:
VC_A0106
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.918
VC_A0115
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.880
VC_A0107
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.858
VC_A0119
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.856
VC_A0110
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.849
VC_A0112
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.848
VC_A0109
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.817
VC_A0113
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.814
VC_A0114
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.806
VC_A0111
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.798
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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