STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0116clpB protein; Similar to GB:M29364 SP:P03815 GB:V00350 GB:X57620 PID:1236633; identified by sequence similarity; putative; Belongs to the ClpA/ClpB family. (869 aa)    
Predicted Functional Partners:
VC_A0108
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 0.996
VC_A0111
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.970
VC_A0120
IcmF-related protein; Similar to GP:2897626; identified by sequence similarity; putative.
 
 
 0.965
VC_A0107
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.962
VC_A0114
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.959
VC_A0119
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.954
VC_A0115
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.945
VC_A0110
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.940
clpP
ATP-dependent Clp protease, proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
 
 
 0.937
VC_A0109
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.932
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.