Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0118Hypothetical protein; Identified by Glimmer2; putative. (227 aa)    
Predicted Functional Partners:
VC_A0119
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.936
vasH
Sigma-54 dependent transcriptional regulator; Transcriptional regulator of the type VI secretion system.
     
 0.912
VC_A0111
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.905
VC_A0109
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.893
VC_A0113
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.890
VC_A0112
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.887
VC_A0115
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.884
VC_A0116
clpB protein; Similar to GB:M29364 SP:P03815 GB:V00350 GB:X57620 PID:1236633; identified by sequence similarity; putative; Belongs to the ClpA/ClpB family.
       0.849
VC_A0107
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.845
VC_A0121
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.844
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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