STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0118Hypothetical protein; Identified by Glimmer2; putative. (227 aa)    
Predicted Functional Partners:
VC_A0119
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.890
vasH
Sigma-54 dependent transcriptional regulator; Transcriptional regulator of the type VI secretion system.
     
 0.858
VC_A0111
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.829
VC_A0109
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.809
VC_A0113
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.803
VC_A0116
clpB protein; Similar to GB:M29364 SP:P03815 GB:V00350 GB:X57620 PID:1236633; identified by sequence similarity; putative; Belongs to the ClpA/ClpB family.
       0.799
VC_A0112
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.796
VC_A0115
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.796
VC_A0121
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.759
VC_A0120
IcmF-related protein; Similar to GP:2897626; identified by sequence similarity; putative.
       0.754
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.