STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0125Hypothetical protein; Identified by Glimmer2; putative. (86 aa)    
Predicted Functional Partners:
rbsD
Ribose ABC transporter protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
     
 0.836
VC_A0129
Ribose ABC transporter, permease protein; Similar to GB:L10328 SP:P04984 GB:M13169 PID:147514 PID:290600; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
     
 0.588
VC_A0126
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
VC_A0130
Ribose ABC transporter, periplasmic D-ribose-binding protein; Similar to GB:L42023 SP:P44737 PID:1003892 PID:1222436 PID:1204755; identified by sequence similarity; putative.
     
 0.515
rbsA
Ribose ABC transporter, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
     
 0.502
VC_A0175
MoxR-related protein; Similar to GB:AE000783; identified by sequence similarity; putative.
      
 0.494
VC_2087
2-oxoglutarate dehydrogenase, E1 component; Similar to GB:J01619 SP:P07015 PID:146201 PID:43019 GB:U00096; identified by sequence similarity; putative.
      
 0.482
VC_A0176
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
      
 0.470
VC_A0132
Ribose operon repressor; Similar to GB:L10328 SP:P25551 GB:D10466 GB:M13169 PID:147517; identified by sequence similarity; putative.
     
 0.440
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
   
    0.432
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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