Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_A0144Immunogenic protein; Similar to SP:P12920 PID:144105; identified by sequence similarity; putative. (351 aa)    
Predicted Functional Partners:
VC_A0146
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.878
VC_0429
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.875
VC_1334
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.566
VC_A0143
Hypothetical protein; Identified by Glimmer2; putative.
       0.558
VC_1853
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0319 family.
  
   
 0.502
VC_A0026
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0319 family.
  
   
 0.467
VC_A0141
C4-dicarboxylate transport sensor protein, putative; Similar to SP:P10047 GB:X06253 GB:Z11529 PID:46179 PID:46182; identified by sequence similarity; putative.
 
     0.457
VC_A0142
C4-dicarboxylate transport transcriptional regulatory protein; Similar to SP:P10046 GB:X06253 GB:Z11529 PID:46180 PID:46183; identified by sequence similarity; putative.
       0.450
VC_1332
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.446
VC_1523
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.444
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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