STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0146Conserved hypothetical protein; Identified by Glimmer2; putative. (721 aa)    
Predicted Functional Partners:
VC_A0144
Immunogenic protein; Similar to SP:P12920 PID:144105; identified by sequence similarity; putative.
 
    0.864
VC_0430
Immunogenic protein; Similar to SP:P12920 PID:144105; identified by sequence similarity; putative.
 
    0.859
VC_A0147
Transcriptional regulator, putative; Similar to SP:P37339 GB:U00096 PID:1789014; identified by sequence similarity; putative.
 
     0.825
VC_A0145
Hypothetical protein; Identified by Glimmer2; putative.
       0.560
VC_A0148
TagA-related protein; Similar to GB:U12265 SP:P24019 PID:516033; identified by sequence similarity; putative.
       0.515
VC_1332
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.514
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.