STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0154Conserved hypothetical protein; Identified by Glimmer2; putative. (158 aa)    
Predicted Functional Partners:
VC_A0157
NADH dehydrogenase, putative; Similar to GB:AL009126; identified by sequence similarity; putative.
 
 
 0.999
VC_A0152
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.998
VC_A0153
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.998
VC_A0155
NADH dehydrogenase, putative; Similar to GP:1934776; identified by sequence similarity; putative.
 
 
 0.998
VC_A0156
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.998
VC_1581
NADH dehydrogenase, putative; Similar to SP:P33607 PID:397909 GB:U00096 PID:1788614 PID:1799638; identified by sequence similarity; putative.
 
 
 0.921
VC_0716
Ferredoxin; Similar to GB:L42023 PID:1003938 PID:1222462 PID:1204778 SP:P44746; identified by sequence similarity; putative.
   
 
 0.618
VC_A0158
Hypothetical protein; Identified by Glimmer2; putative.
       0.480
nhaP2
Conserved hypothetical protein; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily.
      
 0.426
VC_A0159
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.403
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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