STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0158Hypothetical protein; Identified by Glimmer2; putative. (66 aa)    
Predicted Functional Partners:
VC_A0159
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.585
prmB
Adenine-specific methylase, putative; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
      
 0.518
VC_A0627
rRNA methylase, putative; Similar to GP:3328978; identified by sequence similarity; putative.
      
 0.518
VC_A0152
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.480
VC_A0153
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.480
VC_A0154
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.480
VC_A0155
NADH dehydrogenase, putative; Similar to GP:1934776; identified by sequence similarity; putative.
       0.480
VC_A0156
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.480
VC_A0157
NADH dehydrogenase, putative; Similar to GB:AL009126; identified by sequence similarity; putative.
       0.480
VC_1769
DNA methylase HsdM, putative; Similar to GB:AL123456; identified by sequence similarity; putative.
      
 0.457
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.