STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0160Tryptophan-specific transport protein; Similar to GB:L42023 SP:P44614 PID:1003469 PID:1222213 PID:1204542; identified by sequence similarity; putative. (411 aa)    
Predicted Functional Partners:
tnaA
Tryptophanase; Similar to GB:L10328 SP:P00913 GB:X15974 PID:147997 PID:290556; identified by sequence similarity; putative; Belongs to the beta-eliminating lyase family.
 
  
 0.921
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.658
apaH
Bis(5`-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
   0.639
VC_0139
DPS family protein; Similar to GB:L42023 SP:P45173 PID:1007363 PID:1221482 PID:1205585; identified by sequence similarity; putative; Belongs to the Dps family.
    
   0.624
dcuC
C4-dicarboxylate transporter, anaerobic; Responsible for the transport of C4-dicarboxylates during anaerobic growth; Belongs to the DcuC/DcuD transporter (TC 2.A.61) family.
  
   
 0.565
VC_A0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.562
VC_1658
Serine transporter; Similar to SP:P36559 GB:U01233 PID:402256 PID:882691 GB:U00096; identified by sequence similarity; putative.
  
   
 0.559
VC_A0159
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.529
VC_1301
Serine transporter; Similar to SP:P36559 GB:U01233 PID:402256 PID:882691 GB:U00096; identified by sequence similarity; putative.
  
   
 0.519
argH
Argininosuccinate lyase; Similar to SP:P11447 GB:J01590 GB:M21446 PID:145335 PID:396307; identified by sequence similarity; putative.
    
 
 0.481
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.