Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_A0171Conserved hypothetical protein; Identified by Glimmer2; putative. (646 aa)    
Predicted Functional Partners:
VC_A0174
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.980
VC_A0169
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.974
VC_A0170
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.968
VC_A0172
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 0.966
VC_A0175
MoxR-related protein; Similar to GB:AE000783; identified by sequence similarity; putative.
 
   
 0.962
VC_A0173
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.949
VC_A0168
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.884
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family.
  
 0.796
VC_1584
ankB protein; Similar to PID:563740 PID:1754534; identified by sequence similarity; putative.
  
 0.788
VC_1636
Helicase-related protein; Similar to SP:P36927 GB:U00096; identified by sequence similarity; putative.
   
 0.784
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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