STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0175MoxR-related protein; Similar to GB:AE000783; identified by sequence similarity; putative. (318 aa)    
Predicted Functional Partners:
VC_A0172
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.976
VC_A0174
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.971
VC_A0171
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.950
VC_A0173
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.918
VC_A0169
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.897
VC_A0170
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.866
VC_A0168
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.795
VC_0281
Lysine decarboxylase, inducible; Similar to SP:P23892 GB:M67452 GB:M76411 PID:145454 PID:145458; identified by sequence similarity; putative.
    
 
 0.794
VC_A1063
Ornithine decarboxylase, inducible; Similar to GB:M64495 SP:P24169 PID:147331 GB:U00096 PID:1651300; identified by sequence similarity; putative.
    
 
 0.794
VC_A0176
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
     
 0.657
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.