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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0181Hypothetical protein; Identified by Glimmer2; putative. (291 aa)    
Predicted Functional Partners:
VC_0861
Type IV pilin, putative; Similar to PID:1161222 PID:1246299 PID:643582; identified by sequence similarity; putative.
  
     0.621
VC_1271
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.573
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.524
VC_1157
Response regulator; Similar to PID:643672; identified by sequence similarity; putative.
 
  
 0.496
VC_1438
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.484
VC_2054
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.483
VC_A0348
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.469
VC_A0503
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.469
VC_A0561
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.453
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.