Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VC_A0190Hypothetical protein; Identified by Glimmer2; putative. (148 aa)    
Predicted Functional Partners:
VC_A0189
Response regulator; Similar to PID:1736859 PID:1736868; identified by sequence similarity; putative.
 
    0.964
nnr
Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (By similarity). In the N-terminal section; belongs to the NnrE/AIBP family.
  
    0.796
VC_1083
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.772
VC_2060
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.764
VC_0097
Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
    0.757
VC_A0188
Hypothetical protein; Identified by Glimmer2; putative.
       0.747
VC_A1086
Response regulator; Similar to PID:1653310; identified by sequence similarity; putative.
 
  
 0.744
VC_A0217
GGDEF family protein; Similar to GB:AE000657; identified by sequence similarity; putative.
 
      0.743
VC_2208
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.727
VC_0411
MSHA pilin protein MshD; Similar to GB:X77217 PID:673506 PID:673507; identified by sequence similarity; putative.
  
     0.719
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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