STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0212Hypothetical protein; Identified by Glimmer2; putative. (349 aa)    
Predicted Functional Partners:
VC_A0211
Sensory box sensor histidine kinase; Similar to PID:561864; identified by sequence similarity; putative.
 
     0.755
VC_1102
ABC transporter, permease protein, putative; Similar to GB:U14003 SP:P37772 PID:537073 GB:U00096 PID:1790678; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.744
VC_A0583
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.616
VC_2622
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.602
VC_1603
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.558
VC_1598
ABC transporter, periplasmic substrate-binding protein-related protein; Similar to GB:L42023 PID:1006358 PID:1221197 PID:1205330 SP:P45024; identified by sequence similarity; putative.
  
     0.503
VC_1601
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.496
VC_A0978
Amino acid ABC transporter, periplasmic amino acid-binding protein, putative; Similar to GB:J01805 SP:P02910 GB:V01372 GB:V01373 GB:X52093; identified by sequence similarity; putative.
  
     0.495
VC_A0023
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.466
VC_A1086
Response regulator; Similar to PID:1653310; identified by sequence similarity; putative.
  
    0.446
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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