STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0213Conserved hypothetical protein; Identified by Glimmer2; putative. (529 aa)    
Predicted Functional Partners:
VC_A0076
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.637
VC_1763
Chemotaxis protein MotB-related protein; Similar to GB:AE000657; identified by sequence similarity; putative.
      
 0.613
VC_A1071
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.510
VC_0303
Sensor histidine kinase; Similar to GP:2808665; identified by sequence similarity; putative.
  
  
 0.468
VC_2012
Sodium-dependent transporter; Similar to GB:AE000782; identified by sequence similarity; putative; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
 
     0.409
VC_A0214
Multidrug resistance protein D; Similar to GB:L10328 SP:P31442 PID:290522 GB:U00096 PID:1790107; identified by sequence similarity; putative.
  
  
 0.404
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.