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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0227iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to GB:AL009126; identified by sequence similarity; putative. (333 aa)    
Predicted Functional Partners:
VC_A0230
iron(III) ABC transporter, ATP-binding protein; Similar to GB:AL009126; identified by sequence similarity; putative.
 
  
 0.992
VC_A0228
iron(III) ABC transporter, permease protein; Similar to GB:AL009126; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.989
VC_A0229
iron(III) ABC transporter, permease protein; Similar to GB:AL009126; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.988
VC_0779
Ferric vibriobactin ABC transporter, ATP-binding protein; Similar to SP:P23878 GB:X57471 PID:41432 GB:U00096 PID:1778504; identified by sequence similarity; putative.
 
  
 0.778
VC_0201
iron(III) ABC transporter, ATP-binding protein; Similar to PID:41440 GB:U00096 PID:1552729 PID:1786345; identified by sequence similarity; putative.
 
  
 0.757
VC_0777
Ferric vibriobactin ABC transporter, permease protein; Similar to SP:P23876 GB:U15411 GB:X57471 GB:X59402 PID:41430; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.625
VC_0778
Ferric vibriobactin ABC transporter, permease protein; Similar to SP:P23877 GB:X57471 PID:41431 GB:U00096 PID:1778505; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.605
VC_A0226
Hypothetical protein; Identified by Glimmer2; putative.
       0.565
VC_0202
iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to GB:D26562 SP:P07822 GB:M12486 PID:145951 PID:41441; identified by sequence similarity; putative.
  
  
0.554
VC_A0914
Hemin ABC transporter, permease protein, putative; Similar to GP:2738774; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.537
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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