STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0236Hypothetical protein; Identified by Glimmer2; putative. (98 aa)    
Predicted Functional Partners:
VC_0157
Alkaline serine protease; Similar to GB:M25499 SP:P16588 PID:155251; identified by sequence similarity; putative; Belongs to the peptidase S8 family.
   
 0.908
VC_0587
Sulfate permease family protein; Similar to PID:1001216 PID:1001268; identified by sequence similarity; putative.
    
   0.804
VC_2031
Sulfate permease family protein; Similar to SP:P55189 PID:1256150 GB:AL009126; identified by sequence similarity; putative.
    
   0.804
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.804
VC_A0077
Sulfate permease family protein; Similar to GB:AL009126; identified by sequence similarity; putative.
    
   0.804
VC_A0103
Sulfate permease family protein; Similar to GB:AL123456; identified by sequence similarity; putative.
    
   0.804
VC_A0924
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
   0.790
VC_A0067
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.761
VC_0311
Ferredoxin; Similar to SP:P46047 PID:599651; identified by sequence similarity; putative.
    
   0.736
VC_0753
Ferredoxin; Similar to GB:M88654 SP:P25528 PID:145915 GB:U00096 PID:1788874; identified by sequence similarity; putative.
    
   0.736
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.